PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010924870.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 549aa    MW: 57875.9 Da    PI: 7.9647
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010924870.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.28.7e-11168192226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     +++ C +++ t tCk+G++CkF H+
  XP_010924870.1 168 GEKDCTHYMLTRTCKFGNSCKFDHP 192
                     7889********************8 PP

2zf-CCCH37.44.4e-12219245127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++t  Ck+G+rCkF+H++
  XP_010924870.1 219 PGEPECPYYMKTQKCKFGSRCKFNHPK 245
                     5799*********************96 PP

3zf-CCCH34.53.6e-11274295627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C+f+++tG Ck+G++CkF+H++
  XP_010924870.1 274 CSFYMKTGKCKFGPNCKFHHPK 295
                     ********************96 PP

4zf-CCCH36.76.9e-12349373226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++  C+f+++tG CkyG++C+++H+
  XP_010924870.1 349 GETDCPFYLKTGSCKYGATCRYNHP 373
                     6789********************9 PP

5zf-CCCH41.12.9e-13435458326
                     S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                     + +C+f+++tG+Ck+G+rCkF+H+
  XP_010924870.1 435 EIECDFYMKTGQCKFGERCKFHHP 458
                     568********************8 PP

6zf-CCCH42.41.2e-13490513427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     ++C+f+++tGtCk+G++CkF H+p
  XP_010924870.1 490 VICSFYMKTGTCKFGATCKFDHPP 513
                     68********************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0034166193IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.281166194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-5167193IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8168192IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.925218246IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-5218245IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-9220245IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5223246IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5224244IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.098268296IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6268295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6271296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6274298IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-8274295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.413347375IPR000571Zinc finger, CCCH-type
SMARTSM003569.5E-7347374IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9349373IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-5350374IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4353372IPR000571Zinc finger, CCCH-type
SMARTSM003566.7E-7432459IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347432460IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-11435458IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-6435460IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5438458IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-8486513IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.666486514IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-11490513IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.29E-6490513IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-5491511IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MSNQIYNYGS SFGGGGGASS LYSRRATNSY LSDGGSSRLS SVDPFAAADT VMYSDRMSSL  60
YSKAGDGSLR LHGSDIAGFG AAGSFSAAGK IGGGIGTASS AALYASSALD PSAIGGAKRS  120
VEALYNQSIL GSHNTIGQSD ALFSSNSLVK RSRLETASNL PIYPQRPGEK DCTHYMLTRT  180
CKFGNSCKFD HPIWVPEGGI PDWKEVPLVP TSESLPERPG EPECPYYMKT QKCKFGSRCK  240
FNHPKDILNA SAGEVGGEGP DNSVLPERPS EPFCSFYMKT GKCKFGPNCK FHHPKDLQIP  300
PNGEDTGNTG QVESEKDDGA AGDPKPANGH VPITPALLHN SKGLPIRPGE TDCPFYLKTG  360
SCKYGATCRY NHPDRSSINP PLASALGQAV IPSPATNLPF GVLNPAASLL QNINLQSAQA  420
SLGVVPTIYP QRPGEIECDF YMKTGQCKFG ERCKFHHPID RSAPSSDVKQ SLQQNVKLTL  480
AGLPRREGAV ICSFYMKTGT CKFGATCKFD HPPPGEAIAM ATGSGTATGV SATDGGENKA  540
AAALAEGLQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010924870.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLD7T0Z40.0D7T0Z4_VITVI; Putative uncharacterized protein
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58163757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)